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April 2019

In silico Identification of Serovar-Specific Genes for Salmonella Serotyping
09/05/2019
Publication

In silico Identification of Serovar-Specific Genes for Salmonella Serotyping

Xiaomei Zhang, Michael Payne and Ruiting Lan

Front. Microbiol., 24 April 2019 | https://doi.org/10.3389/fmicb.2019.00835

COMMENT: With the development of whole-genome sequencing technology traditional serotyping is being replaced... + info

Biodiversity and Multifunctional Features of Lactic Acid Bacteria Isolated From Table Olive Biofilms.
09/05/2019
Publication

Biodiversity and Multifunctional Features of Lactic Acid Bacteria Isolated From Table Olive Biofilms.

Benítez-Cabello A, Calero-Delgado B, Rodríguez-Gómez F, Garrido-Fernández A, Jiménez-Díaz R, Arroyo-López FN.  Front Microbiol. 2019. doi: 10.3389/fmicb.2019.00836.

COMMENT: This work studies lactic acid bacteria biodiversity in table olive biofilms, and identifies some strains with potential application as starters for industrial production. + info

Adaptive Evolution within Gut Microbiomes of Healthy People.
06/05/2019
Publication

Adaptive Evolution within Gut Microbiomes of Healthy People.

Zhao S, Lieberman TD, Poyet M, Kauffman KM, Gibbons SM, Groussin M, Xavier RJ, Alm EJ.  Cell Host Microbe. Apr 2019.

COMMENT: The authors study how commensal bacteria diversify and adapt within the human gut of each individual. For that, they analyze the intra-individual evolution of Bacteroides fragilis using culture-based population genomics and metagenomics.... + info

Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp.
29/04/2019
Publication

Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp.

Qiu Z, Coleman MA, Provost E, Campbell AH, Kelaher BP, Dalton SJ, Thomas T, Steinberg PD, Marzinelli EM.  Proc Biol Sci. Feb 2019. doi: 10.1098/rspb.2018.1887.

COMMENT:  + info

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid.
28/04/2019
Publication

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid.

Miller S, Naccache SN, Samayoa E, Messacar K, Arevalo S, Federman S, Stryke D, Pham E, Fung B, Bolosky WJ, Ingebrigtsen D, Lorizio W, Paff SM, Leake JA, Pesano R, DeBiasi R, Dominguez S, Chiu CY.  Genome Res. Apr 2019. doi: 10.1101/gr.238170.118.

COMMENT: In this work metagenomics massive sequencing is used to detect pathogens (viruses, bacteria, fungi, and parasites) in cases of encephalitis and meningitis. This kind of metagenomics assay provides a method theoretically able to detect any... + info

Review article: dietary fibre in the era of microbiome science.
24/04/2019
Publication

Review article: dietary fibre in the era of microbiome science.

O'Grady J, O'Connor EM, Shanahan F.  Aliment Pharmacol Ther. Mar 2019. doi: 10.1111/apt.15129.

COMMENT: The review remarks the importance of knowing the gut microbiome composition for personalized diagnostics and diet advice. The traditional role of fibre in our diet is reviewed from the novel point of view provided by microbiome science. The... + info

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
21/04/2019
Publication

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study

K.A. Lackey, J.E. Williams, C.L. Meehan, J.A. Zachek, E.D. Benda, W.J. Price, J.A. Foster, D.W. Sellen, E.W. Kamau-Mbuthia, E.W. Kamundia et al.

COMMENT: This work reports important results... + info

Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.
16/04/2019
Publication

Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.

Hensley-McBain T, Wu MC, Manuzak JA, Cheu RK, Gustin A, Driscoll CB, Zevin AS, Miller CJ, Coronado E, Smith E et al..  PLoS Pathog. Apr 2019. doi: 10.1371/journal.ppat.1007672.

COMMENT: In this work the authors investigate about the gastrointestinal dysfunction in HIV patients focusing on the role of neutrophils and on the possible involvement of the intestinal microbiome in the neutrophil-driven inflammation. The authors... + info

Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota.
15/04/2019
Publication

Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota.

Kang DW, Adams JB, Coleman DM, Pollard EL, Maldonado J, McDonough-Means S, Caporaso JG, Krajmalnik-Brown R.  Sci Rep. Apr 2019. doi: 10.1038/s41598-019-42183-0.

COMMENT: In this work the authors show the promissing results of microbiome-based interventions for autism treatment. Bifidobacteria and Prevotella appears to be the most important taxa that increase their relative abundance in the microbiome of autism... + info

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